PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014429.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 342aa    MW: 38275.3 Da    PI: 9.3632
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014429.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.64.8e-1496181191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  +fY+ YA+e+ F v+k+++k +  +g+ t     Cs++g+  ++ ++    r +  + +t+C a+++v  + d+  +++k+ leHnH+l+p
  Aco014429.1  96 NFYKYYAQEIEFAVVKRSTKMT--DGKATYVIIACSRHGNMYRTVTN---IRPHPLVAKTNCPARINVVINVDSSCVISKITLEHNHTLSP 181
                  6***************998887..9999************9998877...8888999*******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1196181IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MLETGRTRGR ERSAKADSAI KLDATSTEET IEDAAKLNDV VYPEHNDSYT ATYITSIPTL  60
YNVLQMNEER NSEVRDVNIS APEIGMAFIN FDAVFNFYKY YAQEIEFAVV KRSTKMTDGK  120
ATYVIIACSR HGNMYRTVTN IRPHPLVAKT NCPARINVVI NVDSSCVISK ITLEHNHTLS  180
PYKSRFFPCN RVIDTSIKRR LDLNDRAGIR LNKSFNSIIV EAGGYENLTF GKKDAHVYTI  240
AKFREFQAEL KELLHCETSL LSSTSNIAAE SDKKCELALR TLRDLKTKLE NTSSSKGSND  300
IEYSPIAATP SNDASNGRSN NQRVLSPLLV RSKGRPPSKR K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1605657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.48e-10FAR1-related sequence 2